CS 482/682 Spring 2012
Time and Loc:
Tuesday and Thursday, 2:30-3:50am. MC4064.
Lecturer:
Bin Ma (Email: 
Note: Email
is a preferred way if and only if your question requires a one sentence answer.)
Office hours: Wed. 2:00-4:00pm. DC3345.
TA:
Lin He.
Office hours: Monday 10am-12. DC2582C
Please read a separate outline at the link above, especially for the
assignment late policy, collaboration, and other ethical issues.
Announcements:
- IMPORTANT: Due to the Congress 2012 of the Humanities and Social Sciences conference,
there is a university-wide classroom booking conflict.
CS482 classes on May 29 (Tuesday) and May 31 (Thursday)
are moved to DC2585. This change of CS482 classroom is temporary and only affects these two days.
- A sample test case is posted for assignment 1. Check the bottom of this page.
- No TA or prof office hours for the week of May 14-18.
Please make appointment (17 or 18th) or email your question for answers.
- Assignment 1 posted.
- No class on May 22 due to UW's special S12 schecule.
- First class May 1.
Important dates:
- First lecture -- May 1.
- Assignment 1 -- Handout May 15. Due May 29 (noon time).
- Midterm -- June 12. In class.
- Assignment 2 -- Handout June 14. Due June 28 (noon time).
- Assignment 3 -- Handout July 3. Due July 17 (noon time).
- Last lecture of the term -- July 24.
- Final exam -- TBD.
Lecture notes:
Note: Efforts will be made to post notes before classes.
However, there may be last minute changes to the notes before the class.
- Introduction
- Sequence Alignment
- Sligntly Modified Models for Sequence Alignment
- Score and Significane
- Multiple Sequence Alignment
Other Material
- Assignment 1 sample test case (text file).
Note: different test cases will be used in marking.